Unfortunately, this is a problem with the applied texture not the paint. The affected areas can be retextured then repainted. This is problematic. There is a possibility that the areas with new texture will now stand out after painting.
I have seen drywallers that could blend any texture, but this does take a lot of skill and effort. An entire room doesn't need retexuring. It is possible than only 1 or 2 walls are effected. In this case, only these walls require repainting.